Objective:To investigate the effect of high intensity focused ultrasound(HIFU) on the lysozyme molecular structure. Meth-ods:The lysozyme solution was exposed at HIFU with pulse frequency of 0.94 MHz,sound intensity of 3.25×104 W/cm2,pulse repetition period of 4 Hz and duty cycle of 10% for 10 s. The effect of HIFU on the lysozyme molecular structure was studied using CD spectra,fluorescence spectrum,1H nuclear magnetic resonance(1H-NMR) and sodium dodecyl sulfate-polyacrylamide gel(SDS-PAGE) method. Results:The Result showed that after HIFU treatment,there was no obvious change in CD spectrum,indicating that HIFU might cause little effect on lysozyme lower structure. Whereas a weaken fluorescence intensity appeared indicating lysozyme conformation change. Data of SDS-PAGE showed obvious degradation of lysozyme branches. 1H-NMR analysis demonstrated that tryptophan(Trp) residue of lysozyme displayed chemical shift after treatment. Conclusion:The conformation structure of lysozyme could be changed by HIFU.