Objective:To investigate the relationship between pilA and hylEfm genes and the pathogenic mechanism of enterococcus fae-cium. Methods:A multiplex PCR was applied to detect the distribution of hylEfm and pilA. The transfer mode between strains of ente-rococcus faecium was confirmed via filter matings. S1 nuclease and I-CeuI assay was performed to detect the position of pilA and hylEfm genes. Results:Totally 137 strains of enterococcus faecium were isolated,88% clinical isolates(120/137 isolates)carrying pilA genes and 15% clinical isolates(21/137 isolates)carrying hylEfm gene. Fifty strains of inpatients and 50 strains of health controls were isolated respectively;70% isolates(35/50 isolates) carrying pilA genes and 52% isolates(26/50 isolates) carriying pilA genes were respectively observed in inpatients and health controls. Highly significant differences in isolates carrying pilA genes among clinical group,inpatients group and health controls group were observed(P<0.000 1,P=0.008 0). Filter mating confirmed that pilA and hylEfm genes can transfer between different strains through plasmid conjugation. Southern hybridization found both pilA and hylEfm genes located at a large plasmid with size running between 145.5 kb and 291 kb. Conclusion:Positive rate of Pilus-like structures protein genes pilA of enterococcus faecium isolated from our hospital is consistently high. pilA and hylEfm genes simultaneously encode on a large plasmid containing variable antibiotic resistance genes in different isolates of nosocomial enterococcus faecium strains.