Objective:To investigate the clinical significance of low grade squamous intraepithelial lesions(LSIL) in different cell morphology by applying cervical cytology. Methods:Results of 153 patients diagnosed with LSIL by cervical cytology and underwent human papilomavirus(HPV) typing detection,colposcopy and cervical biopsy from July 2017 to June 2018 were retrospectively ana-lyzed. Results:The LSIL patients with different cell morphology diagnosed by cervical cytology had high infection rates of high-risk HPV(HR-HPV)(81.0%);the infection rate of LSIL patients with koilocyte was 77.0%,while of LSIL patients with non-koilocytotic cell was 83.7%. Among them,the HPV16 and HPV18 infection rates of LSIL patients with abnormal cells being non-koilocytotic cell were 18.5%(17/92),significantly higher than those of koilocyte type LSIL patients(6.6%,4/61). The detection rate of biopsy patho-logical diagnosis ≥ intraepithelial lesion of cervix(CIN)Ⅱ among LSIL patients with non-koilocytotic cells was 28.3%(26/92),sig-nificantly higher than that among LSIL patients with koilocyte type(8.2%,5/61),with were statistically significant differences(P<0.05). Conclusion:The LSIL patients with non-koilocytotic cells are more likely to have or progress into CIN Ⅱ and more severe lesions,therefore,clinicians should pay more attention to it.